@swamp/aws/omics
v2026.04.23.3
AWS OMICS infrastructure models
Repository
https://github.com/systeminit/swamp-extensions
Labels
awsomicscloudinfrastructure
Contents
Quality score
Verified by SwampHow well-documented and verifiable this extension is.
Grade A
- Has README or module doc2/2earned
- README has a code example1/1earned
- README is substantive1/1earned
- Most symbols documented1/1earned
- No slow types1/1earned
- Has description1/1earned
- At least one platform tag (or universal)1/1earned
- Two or more platform tags (or universal)1/1earned
- License declared1/1earned
- Verified public repository2/2earned
Install
$ swamp extension pull @swamp/aws/omics@swamp/aws/omics/annotation-storev2026.04.23.2annotation_store.ts
Global Arguments
| Argument | Type | Description |
|---|---|---|
| Description? | string | |
| Name | string | |
| Reference? | object | |
| SseConfig? | object | |
| StoreFormat | enum | |
| StoreOptions? | object | |
| Tags? | record |
createCreate a Omics AnnotationStore
getGet a Omics AnnotationStore
| Argument | Type | Description |
|---|---|---|
| identifier | string | The primary identifier of the Omics AnnotationStore |
updateUpdate a Omics AnnotationStore
deleteDelete a Omics AnnotationStore
| Argument | Type | Description |
|---|---|---|
| identifier | string | The primary identifier of the Omics AnnotationStore |
syncSync Omics AnnotationStore state from AWS
Resources
state(infinite)— Omics AnnotationStore resource state
@swamp/aws/omics/configurationv2026.04.23.2configuration.ts
Global Arguments
| Argument | Type | Description |
|---|---|---|
| Name | string | User-friendly name for the configuration. |
| Description? | string | Optional description for the configuration. |
| RunConfigurations | object | Required run-specific configurations. |
| Tags? | record | Tags for the configuration. |
createCreate a Omics Configuration
getGet a Omics Configuration
| Argument | Type | Description |
|---|---|---|
| identifier | string | The primary identifier of the Omics Configuration |
deleteDelete a Omics Configuration
| Argument | Type | Description |
|---|---|---|
| identifier | string | The primary identifier of the Omics Configuration |
syncSync Omics Configuration state from AWS
Resources
state(infinite)— Omics Configuration resource state
@swamp/aws/omics/reference-storev2026.04.23.2reference_store.ts
Global Arguments
| Argument | Type | Description |
|---|---|---|
| name | string | Instance name for this resource (used as the unique identifier in the factory pattern) |
| Description? | string | A description for the store. |
| Name | string | A name for the store. |
| SseConfig? | object | Server-side encryption (SSE) settings for a store. |
| Tags? | record |
createCreate a Omics ReferenceStore
getGet a Omics ReferenceStore
| Argument | Type | Description |
|---|---|---|
| identifier | string | The primary identifier of the Omics ReferenceStore |
deleteDelete a Omics ReferenceStore
| Argument | Type | Description |
|---|---|---|
| identifier | string | The primary identifier of the Omics ReferenceStore |
syncSync Omics ReferenceStore state from AWS
Resources
state(infinite)— Omics ReferenceStore resource state
@swamp/aws/omics/run-groupv2026.04.23.2run_group.ts
Global Arguments
| Argument | Type | Description |
|---|---|---|
| name | string | Instance name for this resource (used as the unique identifier in the factory pattern) |
| MaxCpus? | number | |
| MaxGpus? | number | |
| MaxDuration? | number | |
| MaxRuns? | number | |
| Name? | string | |
| Tags? | record | A map of resource tags |
createCreate a Omics RunGroup
getGet a Omics RunGroup
| Argument | Type | Description |
|---|---|---|
| identifier | string | The primary identifier of the Omics RunGroup |
updateUpdate a Omics RunGroup
deleteDelete a Omics RunGroup
| Argument | Type | Description |
|---|---|---|
| identifier | string | The primary identifier of the Omics RunGroup |
syncSync Omics RunGroup state from AWS
Resources
state(infinite)— Omics RunGroup resource state
@swamp/aws/omics/sequence-storev2026.04.23.2sequence_store.ts
Global Arguments
| Argument | Type | Description |
|---|---|---|
| name | string | Instance name for this resource (used as the unique identifier in the factory pattern) |
| AccessLogLocation? | string | Location of the access logs. |
| Description? | string | A description for the store. |
| ETagAlgorithmFamily? | enum | |
| FallbackLocation? | string | An S3 location that is used to store files that have failed a direct upload. |
| Name | string | A name for the store. |
| PropagatedSetLevelTags? | array | The tags keys to propagate to the S3 objects associated with read sets in the sequence store. |
| S3AccessPolicy? | string | The resource policy that controls S3 access on the store |
| SseConfig? | object | Server-side encryption (SSE) settings for a store. |
| Tags? | record |
createCreate a Omics SequenceStore
getGet a Omics SequenceStore
| Argument | Type | Description |
|---|---|---|
| identifier | string | The primary identifier of the Omics SequenceStore |
updateUpdate a Omics SequenceStore
deleteDelete a Omics SequenceStore
| Argument | Type | Description |
|---|---|---|
| identifier | string | The primary identifier of the Omics SequenceStore |
syncSync Omics SequenceStore state from AWS
Resources
state(infinite)— Omics SequenceStore resource state
@swamp/aws/omics/variant-storev2026.04.23.2variant_store.ts
Global Arguments
| Argument | Type | Description |
|---|---|---|
| Description? | string | |
| Name | string | |
| Reference | object | |
| SseConfig? | object | |
| Tags? | record |
createCreate a Omics VariantStore
getGet a Omics VariantStore
| Argument | Type | Description |
|---|---|---|
| identifier | string | The primary identifier of the Omics VariantStore |
updateUpdate a Omics VariantStore
deleteDelete a Omics VariantStore
| Argument | Type | Description |
|---|---|---|
| identifier | string | The primary identifier of the Omics VariantStore |
syncSync Omics VariantStore state from AWS
Resources
state(infinite)— Omics VariantStore resource state
@swamp/aws/omics/workflowv2026.04.23.2workflow.ts
Global Arguments
| Argument | Type | Description |
|---|---|---|
| name | string | Instance name for this resource (used as the unique identifier in the factory pattern) |
| DefinitionUri? | string | |
| Description? | string | |
| Engine? | enum | |
| Main? | string | |
| Name? | string | |
| ParameterTemplate? | record | |
| Accelerators? | enum | |
| StorageCapacity? | number | |
| Tags? | record | A map of resource tags |
| StorageType? | enum | |
| WorkflowBucketOwnerId? | string | Optional workflow bucket owner ID to verify the workflow bucket |
| DefinitionRepository? | object | |
| ParameterTemplatePath? | string | Path to the primary workflow parameter template JSON file inside the repository |
| readmePath? | string | The path to the workflow README markdown file within the repository. This file provides documentation and usage information for the workflow. If not specified, the README.md file from the root directory of the repository will be used. |
| readmeUri? | string | The S3 URI of the README file for the workflow. This file provides documentation and usage information for the workflow. The S3 URI must begin with s3://USER-OWNED-BUCKET/. The requester must have access to the S3 bucket and object. The max README content length is 500 KiB. |
| readmeMarkdown? | string | The markdown content for the workflow's README file. This provides documentation and usage information for users of the workflow. |
| ContainerRegistryMap? | object | |
| ContainerRegistryMapUri? | string |
createCreate a Omics Workflow
getGet a Omics Workflow
| Argument | Type | Description |
|---|---|---|
| identifier | string | The primary identifier of the Omics Workflow |
updateUpdate a Omics Workflow
deleteDelete a Omics Workflow
| Argument | Type | Description |
|---|---|---|
| identifier | string | The primary identifier of the Omics Workflow |
syncSync Omics Workflow state from AWS
Resources
state(infinite)— Omics Workflow resource state
@swamp/aws/omics/workflow-versionv2026.04.23.2workflow_version.ts
Global Arguments
| Argument | Type | Description |
|---|---|---|
| name | string | Instance name for this resource (used as the unique identifier in the factory pattern) |
| WorkflowId | string | |
| VersionName | string | |
| DefinitionUri? | string | |
| Description? | string | |
| Engine? | enum | |
| Main? | string | |
| ParameterTemplate? | record | |
| Accelerators? | enum | |
| StorageType? | enum | |
| StorageCapacity? | number | |
| Tags? | record | A map of resource tags |
| WorkflowBucketOwnerId? | string | |
| ParameterTemplatePath? | string | Path to the primary workflow parameter template JSON file inside the repository |
| DefinitionRepository? | object | |
| readmePath? | string | The path to the workflow README markdown file within the repository. This file provides documentation and usage information for the workflow. If not specified, the README.md file from the root directory of the repository will be used. |
| readmeUri? | string | The S3 URI of the README file for the workflow. This file provides documentation and usage information for the workflow. The S3 URI must begin with s3://USER-OWNED-BUCKET/. The requester must have access to the S3 bucket and object. The max README content length is 500 KiB. |
| readmeMarkdown? | string | The markdown content for the workflow's README file. This provides documentation and usage information for users of the workflow. |
| ContainerRegistryMap? | object | |
| ContainerRegistryMapUri? | string |
createCreate a Omics WorkflowVersion
getGet a Omics WorkflowVersion
| Argument | Type | Description |
|---|---|---|
| identifier | string | The primary identifier of the Omics WorkflowVersion |
updateUpdate a Omics WorkflowVersion
deleteDelete a Omics WorkflowVersion
| Argument | Type | Description |
|---|---|---|
| identifier | string | The primary identifier of the Omics WorkflowVersion |
syncSync Omics WorkflowVersion state from AWS
Resources
state(infinite)— Omics WorkflowVersion resource state
2026.04.23.21.5 MBApr 23, 2026
AWS OMICS infrastructure models
Release Notes
- Updated: annotation_store, configuration, reference_store, run_group, sequence_store, variant_store, workflow, workflow_version
linux-x86_64linux-aarch64darwin-x86_64darwin-aarch64
awsomicscloudinfrastructure
2026.04.03.21.5 MBApr 3, 2026
AWS OMICS infrastructure models
Release Notes
- Updated: annotation_store, configuration, reference_store, run_group, sequence_store, variant_store, workflow, workflow_version
linux-x86_64linux-aarch64darwin-x86_64darwin-aarch64
awsomicscloudinfrastructure
2026.03.31.11.6 MBMar 31, 2026
AWS OMICS infrastructure models
Release Notes
- Added: configuration
linux-x86_64linux-aarch64darwin-x86_64darwin-aarch64
awsomicscloudinfrastructure
2026.03.19.11.4 MBMar 19, 2026
AWS OMICS infrastructure models
Release Notes
- Updated: annotation_store, reference_store, run_group, sequence_store, variant_store, workflow, workflow_version
linux-x86_64linux-aarch64darwin-x86_64darwin-aarch64
awsomicscloudinfrastructure
2026.03.16.11.4 MBMar 16, 2026
AWS OMICS infrastructure models
Release Notes
- Updated: annotation_store, reference_store, run_group, sequence_store, variant_store, workflow, workflow_version
linux-x86_64linux-aarch64darwin-x86_64darwin-aarch64
awsomicscloudinfrastructure
2026.03.10.51.4 MBMar 10, 2026
AWS OMICS infrastructure models
linux-x86_64linux-aarch64darwin-x86_64darwin-aarch64
awsomicscloudinfrastructure