Lab #3281: datastore setup strands repo-local audit history and run logs in the new datastore

What happens

swamp datastore setup filesystem moves data into the new datastore that its writers and readers never look for there:

Audit. Setup copies the repo's .swamp/audit/ into <datastore>/audit/ and then removes the source (cleanupSourceDirs, src/libswamp/datastores/setup.ts:462). The command-audit and vault-audit repositories always read and write swampPath(repoDir, "audit") (jsonl_audit_repository.ts:48, jsonl_vault_audit_repository.ts:43). After setup, swamp audit and swamp vault audit-trail lose every entry recorded before setup, and new entries go back to .swamp/audit/.
Run logs. The .log files beside run and output records in .swamp/outputs/ and .swamp/workflow-runs/ are copied with those trees and removed from the source. Run records store logFile relative to the repo (pointing into .swamp/...), and logs are written repo-local whatever the datastore (swamp-club#3266). So swamp workflow history logs and swamp model method history logs show older runs as empty after setup.

Expected

Repo-local files survive setup where their readers look: either setup leaves audit/ and run .log files in .swamp/, or the readers find the migrated copies.

Evidence

Found by code trace during swamp-club#3278 (v3 home for the stream directories). The delete-after-copy path is confirmed in code. It has not yet been reproduced against a compiled binary: that is the first step for whoever picks this up.

Out of scope

Setup into the current datastore itself (--path .swamp) migrates nothing (swamp-club#3162). An external filesystem datastore used as the source is copied, never cleaned (swamp-club#3238).

Registry: bump @swamp-club/extension-scoring to the version carrying #3983 (and #3845) before the v5 rescore

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Move the Zod argument-field extractor into @swamp-club/extension-scoring so the CLI and registry read schemas alike

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serve: dispatch to an idle worker waits for its worker_busy write on the shared gateway transition tail

serve: worker enrollment resolves and creates the worker definition inside the serialized gateway transition tail

Rescore every extension's current version under rubric v5

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Manual: the supported extension dependency categories, the canonical form and the lock rule, rewritten once against the final design

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swamp serve on a v3 datastore: a run interrupted at a clean shutdown is never committed when the bucket is slow, and stays running for every other checkout

Support creating 1Password vaults for new clients

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Generated state schemas require every child of nested objects, so normal resources warn on create/get

Add LinkedIn as a login provider

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Profile showcase read: approved list sorts on review.reviewedAt in memory

Showcase countByStatus: $match live statuses before the $group

Showcase admin queues: index-serve the updatedAt sort on approved/rejected

Annotate and retain past workflow runs and data after the fact

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A workflow step's method output is invisible to `data query` and `data list`, and the method summary's retrieval command returns an older run's data

Skill propulsion rule is silent when no transition is satisfied because stage work is outstanding

package.json mode: no loose-specifier warning for a range push ships as the exact installed version

extension fmt (and any command) creates or rewrites deno.lock when the extension lives in the repo's loaded extensions/ dir

serve shutdown does not wait for worker status writes, and its listener accepts workers after the gateway is disposed

stagecraft: rename work mode `method` to `behavior`, matching swamp's rename of models to behaviors

auth token create --json fields key and signinToken are undocumented; no token-mode service setup page

trigger.schedule is evaluated in the serve host's local time zone, with no zone field and no doc saying so

workflow validate/run say "Workflow not found" for a file that doctor workflows explains is misnamed

telemetry stats says "No telemetry data found" right after successful sends; say the spool is empty because it flushed

Docs: publish typed-secrets Phase 4.6 expression and delivery semantics

Extension registry page: a supported way to include media (images) in the README

CEL: data.latest(...).version is a double, but data.version() only accepts int, so "version - 1" fails at run time

workflow resume --run refuses workflows with the same step name in two jobs, though validate and run accept them

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Serve: delegate namespace-scoped extension pulls and reload without granting administrator access

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v3: chunk durability barrier costs a full drive-cache flush per command on macOS; use an ordering barrier

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issue-lifecycle start drops issue comments: context.comments is always empty

swamp core: a non-string sensitive value reads back as a JSON string

Generated vault keys carry raw data-name and vary characters that strict vault providers reject

bundleExtension 'bundles on different caches do not wait for each other' test fails under CPU load

extension install and extension pull leave different bundles for the same extension version

Registry drops contentMetadata.extensions (method grafts) at confirm-push

Multi-model skill eval: gpt-5.4 and gemini jobs fail preflight every run (OpenAI credits exhausted, Google API key invalid)

local_source_failed drops the indexing error: a transient local extension failure leaves no cause (follow-up to 1672)

Finer-grained method locking: a long-running method on one definition blocks unrelated objects managed by the same definition

Surface (or warn about) values a model method returns besides dataHandles, with sensitive-field support

workflow placement: run a workflow transparently on a specified host, local or via swamp workers (incl. nested child workflows)

issue-lifecycle: pr_merged and ship report success and advance the phase when swamp-club is unreachable, writing nothing upstream

auth login leaves auth.json apiKey empty and stores the key only in ~/.config/swamp/api-key, which the auth gate never reads

swamp-extensions CI: Review Integrity explains a stalled or failed audit (streamed progress, timeout, did-not-finish comment)

Workflow run cancellation on concurrency-key conflict

Read non-string sensitive resource fields back with their type

Run index repair-by-stat misses an in-place, same-size record rewrite that restores mtime within the same second as its entry: ctime is reported in whole seconds

Configurable storage tiers: runs, outputs, data versions and audit move through an ordered list of user-defined tiers, and stay queryable across them

A global argument that evaluates to swamp-namespace expression text is silently dropped, and literal() cannot pass it through

serve: the per-IP WebSocket burst limit can't be configured, so workers behind one NAT IP throttle each other

S3-backed serve: a poll that pulls one file invalidates the whole data catalog, so the next query re-reads every version

extensions_search index is never created if the first attempt fails, until the process restarts

S3/GCS datastore sync: shared sync service lets one sync clear another's dirty marks and pull over unpushed files

swamp-uat: the SIGTERM drain test does not check that the run succeeded

stagecraft: a factory-wide read of work items waiting on a person (no studio, no per-item status loop)

stagecraft: rebind a work item to another tracker (mirrored built-in tickets to Jira)

s3-datastore: first push on a fresh cache prints 'Index merge failed' for a missing local .datastore-index.json

swamp-extensions: use explicit npm:/jsr: specifiers in root extensions/models